Best Medical Accounting Software

Medical Accounting Software is a specialized solution designed to streamline the financial processes of healthcare practices. It simplifies the management of billing, invoicing, payroll, and insurance claims, reducing the time and effort spent on administrative tasks. With automated calculations and real-time reporting, this software helps ensure accuracy and compliance with healthcare regulations. For medical practices looking to improve financial management, Medical Accounting Systems offer advanced features like automated payment reminders, tax calculations, and detailed financial reports. By integrating with electronic health record (EHR) systems, it allows for seamless data sharing, improving both operational efficiency and patient care. Additionally, it helps businesses monitor cash flow, manage accounts receivable, and ensure timely payments, reducing financial errors and delays. Check out our list of the Best Medical Accounting Software to find the ideal system for your healthcare practice, designed to streamline your financial operations and improve your bottom line.

Last Updated: September 03, 2025

84 Software

List of Top Medical Accounting Software | Best Medical Accounting Systems

Pricing Options

Monthly Subscription

Annual Subscription

One-Time Payment

Quote Based

Features

Medical Billing

Claims Management

Invoice Management

Financial Reporting

HIPAA Compliant

Data Integration

Expense Management

Materials Management

Medical Coding

Cash Management

Payment Processing

Purchasing & Receiving

Fixed Asset Management

Approval Process Control

Budgeting/Forecasting

Tax Management

Financial Analysis

Artificial Intelligence

Company Size

Self Employed

Small Business

Medium Business

Enterprise

I'm looking for Medical Accounting Software that is:

Native Salesforce Accounting Platform

Accounting Seed is a comprehensive accounting platform designed for all businesses. It acts like a virtual financial hub, managing all aspects of accounting in one place. With features like invoicing and expense tracking, it streamlines financial tasks. The software is flexible, adapting to the unique needs of different businesses. It's not just about numbers; Accounting Seed provides a clear fina... Read more about Accounting Seed

Free Trial

NA

Pricing Type

Contact Vendor

Location

United States

Best Enterprise Accounting Software

FlexiFinancials is a user-friendly financial management platform designed for small businesses. It simplifies accounting operations, helping users track expenses and income and manage budgets effortlessly. The interface is intuitive, making it easy to generate financial reports and analyze business performance. With secure cloud storage, data is accessible anytime, anywhere. FlexiFinancials also p... Read more about Flexi Software

Free Trial

NA

Pricing Type

Contact Vendor

Location

United States

Accounting Workflow and Close Management Software

FloQast is a renowned accounting workflow automation software. It helps businesses automate tedious business tasks to speed up audit operations. The solution offers robust workflow tools, including FloQast Close, FloQast Variance Analysis, FloQast Reconciliation Management, FloQast Compliance Management, and more. Furthermore, the solution offers best-in-class security at every platform stage to e... Read more about FloQast

Free Trial

NA

Pricing Type

Contact Vendor

Location

United States

Premier UK online accounting software for seamless online invoicing and bookkeeping

ClearBooks is an easy-to-use cloud-based accounting solution tailored for small to medium-sized businesses. It is a unified platform where you can simplify various financial tasks. I.e., effortlessly tracking income and managing expenses to generate professional invoices. Moreover, the software facilitates efficient payroll management and guarantees adherence to tax regulations, reducing complianc... Read more about ClearBooks

Free Trial

30 Days

Pricing Type

$6.75 Per month

Location

United States

Free Accounting Software & Online Invoicing

ZipBooks is a user-friendly accounting software to simplify financial tasks for small and medium-sized businesses. One standout feature is its easy invoicing, allowing you to create and send professional invoices effortlessly. The expense tracking helps you keep tabs on your spending, providing a clear overview of your financial transactions. ZipBooks' financial reporting tools offer valuable insi... Read more about ZipBooks

Free Trial

30 Days

Pricing Type

$15 Per month

Location

United States

Free Accounting Software For UK Small Businesses

Pandle is an easy-to-use accounting software made for small businesses. It helps with financial tasks like making invoices, tracking expenses, and sorting out bank transactions. The program is designed to be simple, so you don't need to be an accounting expert. Pandle's clear layout makes it easy to see your financial information and create reports. It works with different currencies, which is hel... Read more about Pandle

Free Trial

Available

Pricing Type

$5 Per month

Location

United Kingdom

Next-gen innovation platform to Unlock Ideas

Acuvate Wave is a SharePoint-based idea management software designed to streamline innovation and collaboration within organizations. Its integration with SharePoint makes it uniquely suited for businesses already utilizing Microsoft's ecosystem, ensuring a smooth and familiar user experience. The software enables employees to easily submit, track, and develop ideas, fostering a culture of innovat... Read more about Acuvate Wave

Free Trial

NA

Pricing Type

Contact Vendor

Location

United States

Desktop Accounting Software for Small Businesses and Accountants.

CheckMark, Inc. became one of the first companies to roll out accounting software for the Mac when it launched General Ledger in 1985, CheckMark Payroll in 1986 and MultiLedger™ in 1987. A Windows version of CheckMark Payroll debuted in 1994, and MultiLedger™ for Windows was released in 1998. In 2010, CheckMark added CheckMark 1099 Software for Windows and Macintosh. In 2023, CheckMark launch... Read more about CheckMark MultiLedger

Free Trial

More than 30 days

Pricing Type

$619 Per one-time

Location

United States

Denali Business is an all-in-one accounting software tailored for small to medium-sized businesses. This powerful solution offers comprehensive features for managing finances, including accounts payable, accounts receivable, payroll, and budgeting. With its intuitive dashboard, users can easily access real-time financial data, generate reports, and track cash flow, empowering them to make informed... Read more about Denali Business

Free Trial

Available

Pricing Type

Contact Vendor

Location

United States

Project Tracker is a comprehensive project management software designed to streamline project planning and execution. This platform offers a variety of features, including task assignment, progress tracking, and collaboration tools, enabling teams to manage their projects efficiently. With Project Tracker, users can create detailed project timelines, set deadlines, and monitor performance in real-... Read more about Project Tracker

Free Trial

Available

Pricing Type

Contact Vendor

Location

United States

CenterPoint Accounting is a versatile accounting software designed to simplify financial management for businesses of all sizes. This solution provides tools for tracking income, expenses, and reporting, enabling organizations to maintain accurate financial records effortlessly. With CenterPoint Accounting, users can generate customizable reports, manage invoices, and reconcile bank accounts with ... Read more about CenterPoint Accounting

Free Trial

Available

Pricing Type

Contact Vendor

Location

United States

SylogistMission ERP is a specialized Fund Accounting Software designed for nonprofit organizations and government entities to manage their financial operations effectively. The platform offers tools for budgeting, grant management, and financial reporting, ensuring compliance with regulatory standards. With SylogistMission ERP, users can track funding sources, allocate expenses, and generate detai... Read more about SylogistMission ERP

Free Trial

NA

Pricing Type

Contact Vendor

Location

Canada

Clear Books is an intuitive billing and invoicing software tailored for small to medium-sized businesses. This cloud-based solution simplifies financial management by automating invoice generation, tracking payments, and managing expenses. With Clear Books, users can create professional invoices in minutes, customize them with their branding, and send them directly to clients via email. The softwa... Read more about Clear Books

Free Trial

Available

Pricing Type

$12 Per month

Location

United Kingdom

AccuFund Accounting Suite is a robust accounting software designed specifically for non-profits and government organizations. The platform offers a comprehensive suite of financial management tools, including general ledger, accounts payable and receivable, budgeting, and grant management. AccuFund Accounting Suite also supports fund accounting, allowing organizations to track revenue and expenses... Read more about AccuFund Accounting Suite

Free Trial

NA

Pricing Type

Contact Vendor

Location

United States

Saasu is a versatile accounting software designed to meet the needs of small to medium-sized businesses. Offering a wide range of features, including invoicing, expense tracking, and financial reporting, Saasu helps users manage their finances with ease. Its intuitive interface makes it simple for users to navigate, allowing them to generate invoices and monitor cash flow effortlessly. The softwar... Read more about Saasu

Free Trial

Available

Pricing Type

$20 Per month

Location

Australia

GoSimple Software is an innovative accounting solution designed to simplify financial management for small businesses and freelancers. It offers essential features such as invoicing, expense tracking, and financial reporting, all within an easy-to-use interface. Users can create customized invoices and automate billing processes, reducing administrative time and enhancing cash flow. GoSimple also ... Read more about GoSimple Software

Free Trial

Available

Pricing Type

$72 Per feautre

Location

United Kingdom

Billbooks is a versatile billing and invoicing software designed to simplify financial management for freelancers, small businesses, and service providers. With its intuitive interface, Billbooks allows users to create, customize, and send professional invoices quickly and easily. The software features automated reminders for overdue payments, ensuring timely cash flow and reducing administrative ... Read more about Billbooks

Free Trial

Available

Pricing Type

$10 Per user

Location

Australia

Prophix is a powerful budgeting software designed to streamline financial planning and analysis for organizations. The platform provides tools for creating budgets, forecasting revenues, and tracking financial performance. Prophix supports collaborative budgeting processes, allowing teams to work together on financial plans and reports. With features such as automated reporting and analytics, orga... Read more about Prophix

Free Trial

Available

Pricing Type

Contact Vendor

Location

Canada

FINSYNC is an intuitive time tracking software designed to help businesses manage employee hours, streamline payroll, and improve productivity. The platform provides tools for clocking in and out, managing time-off requests, and generating detailed timesheets for accurate billing and payroll processing. FINSYNC’s user-friendly interface allows employees to track their hours easily, while manager... Read more about FINSYNC

Free Trial

Available

Pricing Type

Contact Vendor

Location

United States

Momenteo is a comprehensive Accounting Software designed to streamline and enhance the financial operations of businesses and organizations. It offers a robust platform for managing bookkeeping, invoicing, payroll, and financial reporting, ensuring accurate and efficient financial management. Key features include automated transaction recording, customizable invoicing templates, and real-time fina... Read more about Momenteo

Free Trial

Available

Pricing Type

Contact Vendor

Location

Canada

MYOB Business is an intuitive billing and invoicing software tailored for small to medium-sized enterprises. It simplifies financial management with features such as customizable invoices, automatic payment reminders, and expense tracking. Users can manage their cash flow effectively while generating real-time financial reports that provide insights into business performance. The software supports... Read more about MYOB Business

Free Trial

NA

Pricing Type

$30 Per month

Location

Australia

Scopevisio is a comprehensive customer relationship management (CRM) software designed to improve client interactions and optimize sales workflows. This platform provides tools for lead management, sales forecasting, and customer support, enabling businesses to build strong relationships with their clients. With Scopevisio, users can track customer interactions and automate marketing campaigns, en... Read more about Scopevisio

Free Trial

Available

Pricing Type

$14 Per user

Location

Germany

HostBill is a comprehensive billing and invoicing software designed to streamline financial processes for businesses of all sizes. This platform offers a range of features that enable organizations to automate invoicing, manage subscriptions, and process payments efficiently. With its user-friendly interface, HostBill allows users to create and customize invoices, track payment statuses, and send ... Read more about HostBill

Free Trial

Available

Pricing Type

Contact Vendor

Location

Poland

MoneyWorks is a comprehensive accounting software designed to streamline financial management for businesses of all sizes. This platform offers tools for invoicing, expense tracking, financial reporting, and payroll processing, enabling organizations to manage their finances effectively. With features such as real-time reporting, customizable dashboards, and multi-currency support, MoneyWorks enha... Read more about MoneyWorks

Free Trial

Available

Pricing Type

Contact Vendor

Location

United Kingdom

Rerun is a billing and invoicing software solution designed to help businesses streamline their billing processes and improve cash flow. The platform provides a range of customizable billing templates and supports various payment methods, making it easy to create and send professional invoices to clients. Rerun allows users to set up recurring billing for subscription-based services, manage late p... Read more about Rerun

Free Trial

Available

Pricing Type

$0.01 Per user

Location

United States

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Frequently Asked Questions

Medical Accounting Software helps healthcare providers manage their financial operations, including billing, invoicing, insurance claims, expense tracking, payroll, and revenue reporting—tailored specifically for medical practices, clinics, and hospitals.

It ensures accurate financial records, streamlines patient billing, improves cash flow management, handles complex insurance processes, and supports regulatory compliance with healthcare-specific accounting standards.

Key features include medical billing integration, insurance claim management, patient invoicing, payment posting, revenue cycle management, financial reporting, and compliance tracking (like HIPAA and healthcare financial regulations).

Look for healthcare-specific accounting features, secure patient data handling, easy integration with practice management systems and EMRs, automated claim processing, and detailed financial analytics.

It automates billing and collections, reduces claim denials, provides real-time financial visibility, ensures faster reimbursements, and helps healthcare providers maximize revenue.

Consider your practice size, volume of billing transactions, insurance claim complexity, integration needs with your EMR system, and whether you require multi-location or specialty-specific support.

Small practices use it to manage patient invoices, simplify insurance claims, track expenses, and generate financial reports—allowing physicians to focus more on patient care.

Private medical practices, hospitals, specialty clinics, outpatient centers, dental and orthodontic offices, therapy clinics, urgent care centers, and healthcare groups benefit the most from using Medical Accounting Software for streamlined financial operations.

Multi-specialty clinics handle complex billing across different departments. Medical Accounting Software consolidates these processes, making it easier to manage diverse services, track departmental income, and handle insurance reimbursements efficiently.

It increases billing accuracy, reduces claim denials, speeds up cash flow, improves financial transparency, enhances patient trust with clear invoicing, and supports scalable healthcare operations.