Best Medical Accounting Software

Medical Accounting Software is a specialized solution designed to streamline the financial processes of healthcare practices. It simplifies the management of billing, invoicing, payroll, and insurance claims, reducing the time and effort spent on administrative tasks. With automated calculations and real-time reporting, this software helps ensure accuracy and compliance with healthcare regulations. For medical practices looking to improve financial management, Medical Accounting Systems offer advanced features like automated payment reminders, tax calculations, and detailed financial reports. By integrating with electronic health record (EHR) systems, it allows for seamless data sharing, improving both operational efficiency and patient care. Additionally, it helps businesses monitor cash flow, manage accounts receivable, and ensure timely payments, reducing financial errors and delays. Check out our list of the Best Medical Accounting Software to find the ideal system for your healthcare practice, designed to streamline your financial operations and improve your bottom line.

Last Updated: September 03, 2025

84 Software

List of Top Medical Accounting Software | Best Medical Accounting Systems

Pricing Options

Monthly Subscription

Annual Subscription

One-Time Payment

Quote Based

Features

Medical Billing

Claims Management

Invoice Management

Financial Reporting

HIPAA Compliant

Data Integration

Expense Management

Materials Management

Medical Coding

Cash Management

Payment Processing

Purchasing & Receiving

Fixed Asset Management

Approval Process Control

Budgeting/Forecasting

Tax Management

Financial Analysis

Artificial Intelligence

Company Size

Self Employed

Small Business

Medium Business

Enterprise

I'm looking for Medical Accounting Software that is:

Easy to Use and Affordable Accounting Software for Small Business

Patriot Accounting is a software designed for managing finances. It helps individuals and small businesses keep track of income and expenses easily. With user-friendly interfaces, it simplifies tasks like invoicing and expense tracking. This accounting solution offers features like bank reconciliation, ensuring accurate financial records. Users can generate reports for insights into their financia... Read more about Patriot Accounting

Free Trial

30 Days

Pricing Type

$10 Per month

Location

United States

Designed to help you manage your business finances with ease.

QuickBooks Online is a popular accounting software for businesses. It helps manage finances efficiently. With QuickBooks Online, you can easily track income and expenses. It simplifies invoicing, making it convenient to bill clients. The software offers real-time access to financial data, aiding in informed decision-making. Bank transactions can be automatically imported and categorized, saving ti... Read more about QuickBooks Online

Free Trial

30 Days

Pricing Type

$17.50 Per month

Location

United States

Top Business Management Software

Oracle NetSuite is a top-notch cloud-based ERP solution that offers various tools, such as CRM, Human Capital Management, Omnichannel Commerce, Global Business Management, and Accounting Software. The tool provides its services in different industries, like IT Services, Healthcare, Professional Services, Retail, and Wholesale Distribution. Oracle NetSuite offers a unified platform that businesses,... Read more about NetSuite

Free Trial

Available

Pricing Type

Contact Vendor

Location

United States

Easy, affordable and customizable business management solution

Sage 100 is a powerful software solution available in the market. It contains industry-best features like customization, time & payroll tracking, integration, insights, and reporting. Sage 100 offers excellent collaboration functionalities that let multiple teams work towards the same goal. It gives more transparency and increases team productivity. Moreover, Sage 100 is intuitive and has easy lea... Read more about Sage 100

Free Trial

NA

Pricing Type

Contact Vendor

Location

United Kingdom

Get the tools you need to streamline your business and the insights to drive it forward.

QuickBooks Online Advanced is an online cloud-based software. It is suitable for startups and growing businesses. QuickBooks Online Advanced provides the functionalities that help streamline complex business processes. The platform offers tons of features, including Invoices & Payments, Tax Deductions, In-depth Reports, Income & Expenses, Cash Flow, and Mileage Tracker. QuickBooks Online Advanced ... Read more about QuickBooks Online Advanced

Free Trial

30 Days

Pricing Type

$15 Per month

Location

United States

SAP S/4HANA Cloud is an all-in-one ERP software providing various top-class features to meet comprehensive business requirements. The great functionalities it provides are Analytics, Artificial Intelligence, Customization, and Personalized Business Insights. With SAP S/4HANA Cloud, businesses can develop creative business models and disburse globally to increase growth. Companies can also leverage... Read more about SAP S/4HANA Cloud

Free Trial

14 Days

Pricing Type

Contact Vendor

Location

United States

Personal and small-business financial-accounting software

GnuCash is an open-source accounting software created for personal and small business use. It helps users manage their finances by tracking income, expenses, and investments. The user-friendly interface simplifies tasks like creating invoices, managing bank accounts, and generating financial reports. GnuCash supports multiple currencies and has a double-entry accounting system to ensure accurate b... Read more about GnuCash

Free Trial

NA

Pricing Type

Free

Location

Argentina

Expense Management, Travel and Invoice Software

SAP Concur is a leading travel and expense management solution that simplifies business financial processes. Its user-friendly interface ensures easy navigation, facilitating efficient expense management. The platform automates expense reporting, reducing manual tasks and saving employees and finance teams valuable time. SAP Concur seamlessly integrates with various financial systems, promoting a ... Read more about SAP Concur

Free Trial

15 Days

Pricing Type

Contact Vendor

Location

United States

Pay & Get Paid: Easy Bill Paying Service for Businesses

Melio is a user-friendly online platform that simplifies business payments. It streamlines the payment process for small businesses, allowing them to pay and get paid effortlessly. With Melio, users can schedule payments, track expenses, and manage their cash flow efficiently. The platform supports various payment methods, making it convenient for both payers and recipients. Melio's interface is i... Read more about Melio

Free Trial

NA

Pricing Type

Free

Location

United States

Oracle JD Edwards EnterpriseOne is a powerful, integrated ERP software suite designed for large-scale enterprises. It excels in offering a wide range of applications covering finance, human resources, distribution, consumer goods, manufacturing, and project management. A standout feature is its deep industry-specific functionality, which allows businesses to tailor the solution to their unique sec... Read more about Oracle JD Edwards EnterpriseOne

Free Trial

NA

Pricing Type

Contact Vendor

Location

United States

Scalable cloud ERP for midmarket companies and subsidiaries

SAP Business ByDesign is a versatile, cloud-based ERP solution tailored for mid-sized companies and subsidiaries of large corporations. It stands out for its comprehensive suite of integrated applications, covering everything from finance and HR to sales and procurement. A key advantage is its scalability, allowing businesses to grow and adapt their systems seamlessly. The software provides real-t... Read more about SAP Business ByDesign

Free Trial

NA

Pricing Type

Contact Vendor

Location

United States

Transform your service operations, deliver exceptional service, and improve customer experiences.

Dynamics 365 Field Service is a comprehensive, cloud-based solution from Microsoft that is designed to enhance field service operations for businesses of all sizes. It excels in optimizing scheduling and resource allocation using AI-driven insights, ensuring the most efficient use of field technicians. The software boasts strong asset management capabilities, allowing for proactive maintenance and... Read more about Dynamics 365 Field Service

Free Trial

30 Days

Pricing Type

$$95 Per month

Location

United States

Payroll software that pays off

Wave Payroll is a user-friendly payroll software ideal for small business owners and freelancers. It integrates seamlessly with Wave's free accounting and invoicing tools, creating a unified financial management solution. Key features include automatic tax calculations, direct deposit, and easy employee pay setup. Wave Payroll stands out for its transparency in pricing and simplicity in design, ma... Read more about Wave Payroll

Free Trial

30 Days

Pricing Type

$16 Per month

Location

Canada

Connect your project-centric business in one application

Dynamics 365 Project Operations is a comprehensive solution that unifies project management, resource optimization, and financial tracking. Designed for diverse business needs, it integrates seamlessly with other Dynamics 365 applications, enhancing overall functionality. Key features include advanced project planning tools, enabling precise scheduling and resource allocation. Its real-time analyt... Read more about Dynamics 365 Project Operations

Free Trial

NA

Pricing Type

Contact Vendor

Location

Afghanistan

InvoiceBerry is an intuitive billing and invoicing software designed to streamline financial processes for small businesses and freelancers. This user-friendly platform allows users to create professional invoices quickly and customize them to reflect their brand identity. With InvoiceBerry, businesses can easily track expenses, manage client information, and automate recurring billing, reducing a... Read more about InvoiceBerry

Free Trial

Available

Pricing Type

$15 Per feautre

Location

United Kingdom

Daxko Accounting is a powerful budgeting software tailored for nonprofits and membership-based organizations. It provides comprehensive tools for managing budgets, tracking expenses, and generating financial reports. Daxko Accounting simplifies the process of creating and managing budgets across multiple departments, allowing users to allocate resources more effectively. The software integrates wi... Read more about Daxko Accounting

Free Trial

NA

Pricing Type

Contact Vendor

Location

United States

Dynamics 365 is a powerful customer relationship management (CRM) software designed to enhance business operations and improve customer engagement. This comprehensive platform integrates various business applications, enabling users to manage sales, marketing, customer service, and field operations seamlessly. With its robust analytics and reporting capabilities, Dynamics 365 provides valuable ins... Read more about Dynamics 365

Free Trial

Available

Pricing Type

$50 Per user

Location

United States

Sage Accounting is a powerful accounting software solution designed to simplify financial management for businesses of all sizes. With its userfriendly interface, Sage Accounting allows users to track income, expenses, and financial transactions with ease, providing a comprehensive overview of their financial health. The software offers features such as invoicing, expense tracking, and bank reconc... Read more about Sage Accounting

Free Trial

Available

Pricing Type

$10 Per month

Location

United Kingdom

QuickBooks Enterprise is a powerful accounting software designed for small and medium-sized businesses that require more advanced features than standard accounting solutions. It offers a full suite of financial management tools, including accounts payable and receivable, payroll processing, inventory management, and advanced reporting. QuickBooks Enterprise helps businesses manage complex financia... Read more about QuickBooks Enterprise

Free Trial

NA

Pricing Type

$2210 Per year

Location

United States

Sage 300cloud is a robust accounting software solution designed to streamline financial operations for small to medium-sized businesses. Formerly known as Sage ERP Accpac, it offers comprehensive tools for managing finances, operations, and inventory across multiple locations or companies. Sage 300cloud integrates core accounting functions such as accounts payable and receivable, general ledger, a... Read more about Sage 300cloud

Free Trial

Available

Pricing Type

Contact Vendor

Location

United Kingdom

Unit4 Financials is an advanced accounting software designed to simplify financial management for organizations of all sizes. With a comprehensive suite of tools for budgeting, forecasting, and reporting, it enables finance teams to gain real-time insights into financial performance. The user-friendly interface facilitates easy navigation, allowing users to access critical financial data and make ... Read more about Unit4 Financials

Free Trial

NA

Pricing Type

Contact Vendor

Location

United States

Sage 50cloud Pastel is a robust billing and invoicing software designed to help businesses manage their financial processes efficiently. This platform offers comprehensive tools for creating, sending, and tracking invoices, ensuring that organizations can maintain accurate records of their sales transactions. With Sage 50cloud Pastel, users can easily customize invoices with their branding, set pa... Read more about Sage 50cloud Pastel

Free Trial

NA

Pricing Type

Contact Vendor

Location

United Kingdom

Sage 500 is a robust accounts payable (AP) software solution designed to help businesses automate and streamline their accounts payable processes. The platform enables organizations to manage their supplier invoices, payments, and cash flow more efficiently. With Sage 500, businesses can automate invoice matching, approval workflows, and payment processing, reducing manual work and minimizing the ... Read more about Sage 500

Free Trial

Available

Pricing Type

$52 Per feautre

Location

United Kingdom

Powerful cloud accounting and finance software

Access Financials is a versatile project management software tailored for businesses in the financial industry. The platform offers a comprehensive suite of tools to manage projects, track budgets, and allocate resources effectively. With Access Financials, businesses can break down complex projects into manageable tasks, assign responsibilities to team members, and track progress in real time. Th... Read more about Access Financials

Free Trial

NA

Pricing Type

Contact Vendor

Location

United Kingdom

Oracle Fusion Cloud ERP is a comprehensive Project Management Software designed to empower businesses with the tools needed to plan, execute, and monitor projects effectively. It offers a robust platform for managing project timelines, resources, budgets, and deliverables, ensuring that organizations can achieve their project goals on time and within budget. Oracle Fusion Cloud ERP features an int... Read more about Oracle Fusion Cloud ERP

Free Trial

Available

Pricing Type

Contact Vendor

Location

United States

Explore Today’s Featured List of Top Medical Accounting Software

CashManager

New Zealand's Smartest Accounting Software

CashManager is a gold-level accounting system created for small businesses. Its straightforward interface makes it easy for users, even those without extensive accounting knowledge, to manage their finances effectively. With features like invoicing, expense tracking, and bank reconciliation, CashManager simplifies day-to-day financial tasks. The software operates on both desktop and cloud platform... Read more about CashManager

Free Trial

NA

Pricing Type

Contact Vendor

Location

United States

True Sky is an advanced budgeting software designed to help organizations streamline their financial planning and analysis processes. This platform provides comprehensive tools for budgeting, forecasting, and reporting, ensuring that users can optimize their financial management. With features for collaboration, real-time data integration, and scenario modeling, True Sky enhances decision-making c... Read more about True Sky

Free Trial

NA

Pricing Type

Contact Vendor

Location

Canada

ALTO Accounts Payable is a powerful accounts payable software designed to streamline the management of invoices, payments, and vendor relationships. The platform automates key processes such as invoice approvals, payment processing, and reconciliation, reducing manual workload and minimizing errors. ALTO Accounts Payable offers tools for tracking payment statuses, managing cash flow, and generatin... Read more about ALTO Accounts Payable

Free Trial

Available

Pricing Type

Contact Vendor

Location

Canada

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Frequently Asked Questions

Medical Accounting Software helps healthcare providers manage their financial operations, including billing, invoicing, insurance claims, expense tracking, payroll, and revenue reporting—tailored specifically for medical practices, clinics, and hospitals.

It ensures accurate financial records, streamlines patient billing, improves cash flow management, handles complex insurance processes, and supports regulatory compliance with healthcare-specific accounting standards.

Key features include medical billing integration, insurance claim management, patient invoicing, payment posting, revenue cycle management, financial reporting, and compliance tracking (like HIPAA and healthcare financial regulations).

Look for healthcare-specific accounting features, secure patient data handling, easy integration with practice management systems and EMRs, automated claim processing, and detailed financial analytics.

It automates billing and collections, reduces claim denials, provides real-time financial visibility, ensures faster reimbursements, and helps healthcare providers maximize revenue.

Consider your practice size, volume of billing transactions, insurance claim complexity, integration needs with your EMR system, and whether you require multi-location or specialty-specific support.

Small practices use it to manage patient invoices, simplify insurance claims, track expenses, and generate financial reports—allowing physicians to focus more on patient care.

Private medical practices, hospitals, specialty clinics, outpatient centers, dental and orthodontic offices, therapy clinics, urgent care centers, and healthcare groups benefit the most from using Medical Accounting Software for streamlined financial operations.

Multi-specialty clinics handle complex billing across different departments. Medical Accounting Software consolidates these processes, making it easier to manage diverse services, track departmental income, and handle insurance reimbursements efficiently.

It increases billing accuracy, reduces claim denials, speeds up cash flow, improves financial transparency, enhances patient trust with clear invoicing, and supports scalable healthcare operations.